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Khamisi Kibet

Khamisi Kibet

Software Developer

I am a computer scientist, software developer, and YouTuber, as well as the developer of this website, spinncode.com. I create content to help others learn and grow in the field of software development.

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  • Email

    infor@spinncode.com
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    Nairobi, Kenya
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7 Months ago | 48 views

**Course Title:** Mastering R Programming: Data Analysis, Visualization, and Beyond **Section Title:** Debugging, Testing, and Profiling R Code **Topic:** Unit testing in R using `testthat` **Overview** In this topic, we'll explore the concept of unit testing in R using the `testthat` package. Unit testing is an essential part of the software development process, ensuring that individual components of your code work as expected. By writing unit tests, you can catch bugs early on, reduce debugging time, and improve the overall quality of your code. **What is Unit Testing?** Unit testing is a software testing technique where individual units of the source code are tested to ensure they work as expected. In R, a unit can be a single function or a set of related functions. **Why Use `testthat`?** `testthat` is a popular testing package in R that provides a rich set of features for writing unit tests. It's widely adopted in the R community and is known for its simplicity, flexibility, and comprehensive reporting. **Installing `testthat`** Before we dive into the details, make sure you have `testthat` installed. You can install it using the following command: ```r install.packages("testthat") ``` **Basic Example** Here's a simple example to get you started: ```r # My first test library(testthat) # Define the function to test add <- function(x, y) { x + y } # Test the function test_add <- function() { expect_equal(add(1, 2), 3) expect_error(add("a", 2)) } # Run the test test_add() ``` In this example, we define a function `add` that takes two numbers and returns their sum. We then define a test function `test_add` that uses `expect_equal` to test whether the output of the `add` function is as expected. Finally, we run the test using `test_add()`. **Key Functions in `testthat`** Here are some key functions in `testthat` that you should know about: * `expect_equal`: Test whether two values are equal. * `expect_identical`: Test whether two values are identical. * `expect_error`: Test whether a function throws an error. * `expect_warning`: Test whether a function throws a warning. * `expect_message`: Test whether a function throws a specific message. **Using `testthat` with `RStudio`** If you're using `RStudio`, you can use the `Test` tab to run your tests. Here's how you can do it: 1. Open your R file that contains the tests. 2. Click on the `Test` tab in the `RStudio` toolbar. 3. Click on the `Run All` button to run all tests. 4. You can also use the `Run Current` button to run the tests in the current file. **Best Practices** Here are some best practices to keep in mind when writing unit tests with `testthat`: * Keep your tests short and focused. * Test only one thing per test. * Use meaningful names for your tests. * Use descriptive comments to explain what the test is doing. **Additional Resources** For more information on `testthat`, check out the following resources: * [testthat official documentation](https://testthat.r-lib.org/) * [Testing R Code](https://github.com/ucb-stat133/stat133-fall-2019/tree/master/f4-testing) * [Best Practices for Testing in R](https://swcarpentry.github.io/r-novice-testing/) **Exercises** 1. Write a test for a function that calculates the mean of a vector of numbers. 2. Write a test for a function that checks whether a value is within a certain range. 3. Write a test for a function that returns a specific value if a certain condition is met. **Leave a Comment or Ask for Help** Have any questions or need help with writing unit tests in R? Leave a comment below or reach out to me directly. I'd be happy to help! In the next topic, we'll cover profiling code performance with `Rprof` and `microbenchmark`.
Course

Unit Testing in R using testthat.

**Course Title:** Mastering R Programming: Data Analysis, Visualization, and Beyond **Section Title:** Debugging, Testing, and Profiling R Code **Topic:** Unit testing in R using `testthat` **Overview** In this topic, we'll explore the concept of unit testing in R using the `testthat` package. Unit testing is an essential part of the software development process, ensuring that individual components of your code work as expected. By writing unit tests, you can catch bugs early on, reduce debugging time, and improve the overall quality of your code. **What is Unit Testing?** Unit testing is a software testing technique where individual units of the source code are tested to ensure they work as expected. In R, a unit can be a single function or a set of related functions. **Why Use `testthat`?** `testthat` is a popular testing package in R that provides a rich set of features for writing unit tests. It's widely adopted in the R community and is known for its simplicity, flexibility, and comprehensive reporting. **Installing `testthat`** Before we dive into the details, make sure you have `testthat` installed. You can install it using the following command: ```r install.packages("testthat") ``` **Basic Example** Here's a simple example to get you started: ```r # My first test library(testthat) # Define the function to test add <- function(x, y) { x + y } # Test the function test_add <- function() { expect_equal(add(1, 2), 3) expect_error(add("a", 2)) } # Run the test test_add() ``` In this example, we define a function `add` that takes two numbers and returns their sum. We then define a test function `test_add` that uses `expect_equal` to test whether the output of the `add` function is as expected. Finally, we run the test using `test_add()`. **Key Functions in `testthat`** Here are some key functions in `testthat` that you should know about: * `expect_equal`: Test whether two values are equal. * `expect_identical`: Test whether two values are identical. * `expect_error`: Test whether a function throws an error. * `expect_warning`: Test whether a function throws a warning. * `expect_message`: Test whether a function throws a specific message. **Using `testthat` with `RStudio`** If you're using `RStudio`, you can use the `Test` tab to run your tests. Here's how you can do it: 1. Open your R file that contains the tests. 2. Click on the `Test` tab in the `RStudio` toolbar. 3. Click on the `Run All` button to run all tests. 4. You can also use the `Run Current` button to run the tests in the current file. **Best Practices** Here are some best practices to keep in mind when writing unit tests with `testthat`: * Keep your tests short and focused. * Test only one thing per test. * Use meaningful names for your tests. * Use descriptive comments to explain what the test is doing. **Additional Resources** For more information on `testthat`, check out the following resources: * [testthat official documentation](https://testthat.r-lib.org/) * [Testing R Code](https://github.com/ucb-stat133/stat133-fall-2019/tree/master/f4-testing) * [Best Practices for Testing in R](https://swcarpentry.github.io/r-novice-testing/) **Exercises** 1. Write a test for a function that calculates the mean of a vector of numbers. 2. Write a test for a function that checks whether a value is within a certain range. 3. Write a test for a function that returns a specific value if a certain condition is met. **Leave a Comment or Ask for Help** Have any questions or need help with writing unit tests in R? Leave a comment below or reach out to me directly. I'd be happy to help! In the next topic, we'll cover profiling code performance with `Rprof` and `microbenchmark`.

Images

Mastering R Programming: Data Analysis, Visualization, and Beyond

Course

Objectives

  • Develop a solid understanding of R programming fundamentals.
  • Master data manipulation and statistical analysis using R.
  • Learn to create professional visualizations and reports using R's powerful packages.
  • Gain proficiency in using R for real-world data science, machine learning, and automation tasks.
  • Understand best practices for writing clean, efficient, and reusable R code.

Introduction to R and Environment Setup

  • Overview of R: History, popularity, and use cases in data analysis.
  • Setting up the R environment: Installing R and RStudio.
  • Introduction to RStudio interface and basic usage.
  • Basic syntax of R: Variables, data types, and basic arithmetic operations.
  • Lab: Install R and RStudio, and write a simple script performing basic mathematical operations.

Data Types and Structures in R

  • Understanding R’s data types: Numeric, character, logical, and factor.
  • Introduction to data structures: Vectors, lists, matrices, arrays, and data frames.
  • Subsetting and indexing data in R.
  • Introduction to R’s built-in functions and how to use them.
  • Lab: Create and manipulate vectors, matrices, and data frames to solve data-related tasks.

Control Structures and Functions in R

  • Using control flow in R: if-else, for loops, while loops, and apply functions.
  • Writing custom functions in R: Arguments, return values, and scope.
  • Anonymous functions and lambda functions in R.
  • Best practices for writing reusable functions.
  • Lab: Write programs using loops and control structures, and create custom functions to automate repetitive tasks.

Data Import and Export in R

  • Reading and writing data in R: CSV, Excel, and text files.
  • Using `readr` and `readxl` for efficient data import.
  • Introduction to working with databases in R using `DBI` and `RSQLite`.
  • Handling missing data and data cleaning techniques.
  • Lab: Import data from CSV and Excel files, perform basic data cleaning, and export the cleaned data.

Data Manipulation with dplyr and tidyr

  • Introduction to the `dplyr` package for data manipulation.
  • Key `dplyr` verbs: `filter()`, `select()`, `mutate()`, `summarize()`, and `group_by()`.
  • Data reshaping with `tidyr`: Pivoting and unpivoting data using `gather()` and `spread()`.
  • Combining datasets using joins in `dplyr`.
  • Lab: Perform complex data manipulation tasks using `dplyr` and reshape data using `tidyr`.

Statistical Analysis in R

  • Descriptive statistics: Mean, median, mode, variance, and standard deviation.
  • Performing hypothesis testing: t-tests, chi-square tests, and ANOVA.
  • Introduction to correlation and regression analysis.
  • Using R for probability distributions: Normal, binomial, and Poisson distributions.
  • Lab: Perform statistical analysis on a dataset, including hypothesis testing and regression analysis.

Data Visualization with ggplot2

  • Introduction to the grammar of graphics and the `ggplot2` package.
  • Creating basic plots: Scatter plots, bar charts, line charts, and histograms.
  • Customizing plots: Titles, labels, legends, and themes.
  • Creating advanced visualizations: Faceting, adding annotations, and custom scales.
  • Lab: Use `ggplot2` to create and customize a variety of visualizations, including scatter plots and bar charts.

Advanced Data Visualization Techniques

  • Creating interactive visualizations with `plotly` and `ggplotly`.
  • Time series data visualization in R.
  • Using `leaflet` for creating interactive maps.
  • Best practices for designing effective visualizations for reports and presentations.
  • Lab: Develop interactive visualizations and build a dashboard using `plotly` or `shiny`.

Working with Dates and Times in R

  • Introduction to date and time classes: `Date`, `POSIXct`, and `POSIXlt`.
  • Performing arithmetic operations with dates and times.
  • Using the `lubridate` package for easier date manipulation.
  • Working with time series data in R.
  • Lab: Manipulate and analyze time series data, and perform operations on dates using `lubridate`.

Functional Programming in R

  • Introduction to functional programming concepts in R.
  • Using higher-order functions: `apply()`, `lapply()`, `sapply()`, and `map()`.
  • Working with pure functions and closures.
  • Advanced functional programming with the `purrr` package.
  • Lab: Solve data manipulation tasks using `apply` family functions and explore the `purrr` package for advanced use cases.

Building Reports and Dashboards with RMarkdown and Shiny

  • Introduction to RMarkdown for reproducible reports.
  • Integrating R code and outputs in documents.
  • Introduction to `Shiny` for building interactive dashboards.
  • Deploying Shiny apps and RMarkdown documents.
  • Lab: Create a reproducible report using RMarkdown and build a basic dashboard with `Shiny`.

Introduction to Machine Learning with R

  • Overview of machine learning in R using the `caret` and `mlr3` packages.
  • Supervised learning: Linear regression, decision trees, and random forests.
  • Unsupervised learning: K-means clustering, PCA.
  • Model evaluation techniques: Cross-validation and performance metrics.
  • Lab: Implement a simple machine learning model using `caret` or `mlr3` and evaluate its performance.

Big Data and Parallel Computing in R

  • Introduction to handling large datasets in R using `data.table` and `dplyr`.
  • Working with databases and SQL queries in R.
  • Parallel computing in R: Using `parallel` and `foreach` packages.
  • Introduction to distributed computing with `sparklyr` and Apache Spark.
  • Lab: Perform data analysis on large datasets using `data.table`, and implement parallel processing using `foreach`.

Debugging, Testing, and Profiling R Code

  • Debugging techniques in R: Using `browser()`, `traceback()`, and `debug()`.
  • Unit testing in R using `testthat`.
  • Profiling code performance with `Rprof` and `microbenchmark`.
  • Writing efficient R code and avoiding common performance pitfalls.
  • Lab: Write unit tests for R functions using `testthat`, and profile code performance to optimize efficiency.

Version Control and Project Management in R

  • Introduction to project organization in R using `renv` and `usethis`.
  • Using Git for version control in RStudio.
  • Managing R dependencies with `packrat` and `renv`.
  • Best practices for collaborative development and sharing R projects.
  • Lab: Set up version control for an R project using Git, and manage dependencies with `renv`.

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